If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ), 'gf_id' => 'HOM05D000622', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000622' ), 'data_identifier' => 'HOM05D000622', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000622', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '916', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15750' => 'bna', 'A02p41330' => 'bna', 'A03p46690' => 'bna', 'A06p09790' => 'bna', 'A06p39030' => 'bna', 'A06p43020' => 'bna', 'A06p47600' => 'bna', 'A07p07210' => 'bna', 'A07p31690' => 'bna', 'A07p31700' => 'bna', 'A07p35560' => 'bna', 'A09p07180' => 'bna', 'A09p20720' => 'bna', 'Aa31LG11G2300' => 'aar', 'Aa31LG1G1190' => 'aar', 'Aa31LG2G7020' => 'aar', 'Aa31LG4G11670' => 'aar', 'Aa31LG5G3350' => 'aar', 'Aa31sc95G120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2483' => 'aag', 'Actinidia04817' => 'ach', 'Actinidia09463' => 'ach', 'Actinidia11374' => 'ach', 'Actinidia13951' => 'ach', 'Actinidia18985' => 'ach', 'Actinidia19912' => 'ach', 'Actinidia19913' => 'ach', 'Actinidia23399' => 'ach', 'Actinidia23762' => 'ach', 'Actinidia27245' => 'ach', 'Actinidia30045' => 'ach', 'Actinidia30128' => 'ach', 'Actinidia31936' => 'ach', 'Actinidia31937' => 'ach', 'Actinidia34724' => 'ach', 'Actinidia35040' => 'ach', 'Actinidia37549' => 'ach', 'Actinidia39931' => 'ach', 'Ah.02g114090' => 'amhyb', 'Ah.03g138870' => 'amhyb', 'Ah.04g153740' => 'amhyb', 'Ah.06g185030' => 'amhyb', 'Ah.08g213590' => 'amhyb', 'Ah.08g214660' => 'amhyb', 'Ah.10g032290' => 'amhyb', 'Ah.11g047660' => 'amhyb', 'Ah.13g074740' => 'amhyb', 'Ah.15g092620' => 'amhyb', 'AL1G25520' => 'aly', 'AL26U10020' => 'aly', 'AL2G28340' => 'aly', 'AL3G18520' => 'aly', 'AL3G18530' => 'aly', 'AL3G18540' => 'aly', 'AL5G13420' => 'aly', 'AL5G36710' => 'aly', 'AL8G16150' => 'aly', 'AL8G21670' => 'aly', 'AL8G37630' => 'aly', 'Aqoxy2G03749' => 'aox', 'Aqoxy3G00521' => 'aox', 'Aqoxy3G00523' => 'aox', 'Aqoxy3G03678' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5F286G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5J6DAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6F5SH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E5YE70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6ZUER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6685F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC6LGZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N01RGU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NN057S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSV7ZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UY4AIZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YCZ32I' => 'arhy', 'AT1G13730' => 'ath', 'AT1G69250' => 'ath', 'AT2G03640' => 'ath', 'AT3G07250' => 'ath', 'AT3G24463' => 'ath', 'AT3G25150' => 'ath', 'AT3G55540' => 'ath', 'AT5G43960' => 'ath', 'AT5G48650' => 'ath', 'AT5G60980' => 'ath', 'ATR0177G040' => 'atr', 'ATR0561G075' => 'atr', 'ATR0787G226' => 'atr', 'Atru.chr1.1102' => 'acertr', 'Atru.chr11.1619' => 'acertr', 'Atru.chr11.886' => 'acertr', 'Atru.chr4.1911' => 'acertr', 'Atru.chr6.1431' => 'acertr', 'Atru.chr6.1433' => 'acertr', 'Atru.chr9.556' => 'acertr', 'AUR62001138' => 'cqu', 'AUR62003092' => 'cqu', 'AUR62007909' => 'cqu', 'AUR62008546' => 'cqu', 'AUR62008795' => 'cqu', 'AUR62015242' => 'cqu', 'AUR62016541' => 'cqu', 'AUR62018039' => 'cqu', 'AUR62021547' => 'cqu', 'AUR62025444' => 'cqu', 'BcaB02g06472' => 'bca', 'BcaB03g14289' => 'bca', 'BcaB03g15461' => 'bca', 'BcaB03g15462' => 'bca', 'BcaB03g15884' => 'bca', 'BcaB04g19910' => 'bca', 'BcaB05g24434' => 'bca', 'BcaB06g26634' => 'bca', 'BcaB06g26716' => 'bca', 'BcaB07g30987' => 'bca', 'BcaB07g34226' => 'bca', 'BcaB08g34789' => 'bca', 'BcaC03g15063' => 'bca', 'BcaC03g18069' => 'bca', 'BcaC04g21886' => 'bca', 'BcaC04g23468' => 'bca', 'BcaC05g25281' => 'bca', 'BcaC06g30773' => 'bca', 'BcaC06g31648' => 'bca', 'BcaC06g31667' => 'bca', 'BcaC06g33186' => 'bca', 'BcaC06g34609' => 'bca', 'BcaC06g35703' => 'bca', 'BcaC06g35786' => 'bca', 'BcaC08g45905' => 'bca', 'BcaC08g45907' => 'bca', 'BcaC08g46375' => 'bca', 'BcaNung06898' => 'bca', 'BcaNung07185' => 'bca', 'BolC2t08686H' => 'bol', 'BolC2t12176H' => 'bol', 'BolC5t29905H' => 'bol', 'BolC6t38820H' => 'bol', 'BolC6t38821H' => 'bol', 'BolC6t39364H' => 'bol', 'BolC7t41556H' => 'bol', 'BolC7t41657H' => 'bol', 'BolC7t43179H' => 'bol', 'BolC7t43915H' => 'bol', 'BolC7t44451H' => 'bol', 'BolC7t44998H' => 'bol', 'BolC9t53716H' => 'bol', 'BolC9t55522H' => 'bol', 'BraA02t06636Z' => 'bra', 'BraA02t09078Z' => 'bra', 'BraA03t13792Z' => 'bra', 'BraA06t24169Z' => 'bra', 'BraA06t26816Z' => 'bra', 'BraA06t27628Z' => 'bra', 'BraA07t28507Z' => 'bra', 'BraA07t30795Z' => 'bra', 'BraA07t30796Z' => 'bra', 'BraA07t31144Z' => 'bra', 'BraA09t36367Z' => 'bra', 'BraA09t37676Z' => 'bra', 'C02p26200' => 'bna', 'C02p61290' => 'bna', 'C05p11580' => 'bna', 'C06p37100' => 'bna', 'C06p37110' => 'bna', 'C06p37120' => 'bna', 'C06p40680' => 'bna', 'C07p10900' => 'bna', 'C07p11870' => 'bna', 'C07p26500' => 'bna', 'C07p34010' => 'bna', 'C07p39310' => 'bna', 'C07p44750' => 'bna', 'C09p08020' => 'bna', 'C09p26190' => 'bna', 'CAN.G1130.11' => 'can', 'CAN.G1251.5' => 'can', 'CAN.G1528.3' => 'can', 'CAN.G181.56' => 'can', 'CAN.G181.57' => 'can', 'CAN.G2186.2' => 'can', 'CAN.G276.9' => 'can', 'CAN.G497.98' => 'can', 'CAN.G524.14' => 'can', 'CAN.G707.1' => 'can', 'CAN.G874.9' => 'can', 'CANSAT01G2814' => 'cansat', 'CANSAT56G0997' => 'cansat', 'CANSAT64G2708' => 'cansat', 'CANSAT78G0543' => 'cansat', 'CARHR014120' => 'chi', 'CARHR062130' => 'chi', 'CARHR101470' => 'chi', 'CARHR144050' => 'chi', 'CARHR145980' => 'chi', 'CARHR179440' => 'chi', 'CARHR183310' => 'chi', 'CARHR274690' => 'chi', 'Carub.0001s1347' => 'cru', 'Carub.0002s1584' => 'cru', 'Carub.0003s0677' => 'cru', 'Carub.0003s2548' => 'cru', 'Carub.0005s0278' => 'cru', 'Carub.0005s2228' => 'cru', 'Carub.0008s0459' => 'cru', 'Carub.0008s0832' => 'cru', 'Carub.0008s2167' => 'cru', 'Ca_03469_v3' => 'car', 'Ca_04362_v3' => 'car', 'Ca_08730_v3' => 'car', 'Ca_08739_v3' => 'car', 'Ca_09649_v3' => 'car', 'Ca_11880_v3' => 'car', 'Ca_18799_v3' => 'car', 'Ca_21765_v3' => 'car', 'CBR_g22292' => 'cbr', 'Cc00_g12120' => 'ccan', 'Cc01_g16650' => 'ccan', 'Cc01_g16660' => 'ccan', 'Cc01_g17820' => 'ccan', 'Cc03_g06370' => 'ccan', 'Cc11_g11920' => 'ccan', 'CDE02G1514' => 'cde', 'CDE04G2556' => 'cde', 'CDE05G2216' => 'cde', 'CDE05G3375' => 'cde', 'Cfa002481' => 'cfa', 'Cfa007672' => 'cfa', 'Cfa008874' => 'cfa', 'Cfa010415' => 'cfa', 'Cfa014786' => 'cfa', 'Cfa019346' => 'cfa', 'Cfa022361' => 'cfa', 'Ciclev10004887m.g' => 'ccl', 'Ciclev10011679m.g' => 'ccl', 'Ciclev10013743m.g' => 'ccl', 'Ciclev10020020m.g' => 'ccl', 'Ciclev10020038m.g' => 'ccl', 'Ciclev10020094m.g' => 'ccl', 'Ciclev10031630m.g' => 'ccl', 'CiPaw.01G177600' => 'cil', 'CiPaw.02G106700' => 'cil', 'CiPaw.03G088000' => 'cil', 'CiPaw.03G270600' => 'cil', 'CiPaw.04G055200' => 'cil', 'CiPaw.04G190400' => 'cil', 'CiPaw.09G156800' => 'cil', 'CiPaw.11G054600' => 'cil', 'CiPaw.13G049200' => 'cil', 'CiPaw.14G039000' => 'cil', 'ClCG05G003970' => 'cla', 'ClCG06G001440' => 'cla', 'ClCG06G015590' => 'cla', 'COL.COLO4_04940' => 'col', 'COL.COLO4_08648' => 'col', 'COL.COLO4_10570' => 'col', 'COL.COLO4_15476' => 'col', 'COL.COLO4_15970' => 'col', 'COL.COLO4_24338' => 'col', 'COL.COLO4_27875' => 'col', 'COL.COLO4_33333' => 'col', 'COL.COLO4_36559' => 'col', 'Cpa.g.sc14.183' => 'cpa', 'Cpa.g.sc34.104' => 'cpa', 'Cpa.g.sc59.3' => 'cpa', 'Cpa.g.sc746.3' => 'cpa', 'Cpa.g.sc87.25' => 'cpa', 'Cre02.g092400' => 'cre', 'CsaV3_1G002980' => 'csa', 'CsaV3_3G011650' => 'csa', 'CsaV3_6G007380' => 'csa', 'CSS0003255' => 'camsi', 'CSS0005487' => 'camsi', 'CSS0005778' => 'camsi', 'CSS0007219' => 'camsi', 'CSS0007441' => 'camsi', 'CSS0013711' => 'camsi', 'CSS0014958' => 'camsi', 'CSS0022024' => 'camsi', 'CSS0023558' => 'camsi', 'CSS0024270' => 'camsi', 'CSS0027365' => 'camsi', 'CSS0027911' => 'camsi', 'CSS0032675' => 'camsi', 'CSS0032976' => 'camsi', 'CSS0034173' => 'camsi', 'CSS0036185' => 'camsi', 'CSS0037943' => 'camsi', 'CSS0044038' => 'camsi', 'CSS0045307' => 'camsi', 'CSS0046555' => 'camsi', 'DCAR_000520' => 'dca', 'DCAR_004169' => 'dca', 'DCAR_004691' => 'dca', 'DCAR_008108' => 'dca', 'DCAR_011038' => 'dca', 'DCAR_011564' => 'dca', 'DCAR_012588' => 'dca', 'DCAR_012673' => 'dca', 'DCAR_018518' => 'dca', 'DCAR_018635' => 'dca', 'DCAR_023167' => 'dca', 'DCAR_027349' => 'dca', 'DCAR_028815' => 'dca', 'Dinv12641' => 'din', 'Dinv16398' => 'din', 'Dinv17425' => 'din', 'Dinv19160' => 'din', 'Dinv22771' => 'din', 'Dinv27115' => 'din', 'Dinv29801' => 'din', 'Dinv33833' => 'din', 'Dinv34062' => 'din', 'Dinv34937' => 'din', 'Duzib068G0776' => 'dzi', 'Duzib084G0887' => 'dzi', 'Duzib114G0188' => 'dzi', 'Duzib114G0363' => 'dzi', 'Duzib114G0442' => 'dzi', 'Duzib128G0368' => 'dzi', 'Duzib133G0889' => 'dzi', 'Duzib133G1104' => 'dzi', 'Duzib138G0293' => 'dzi', 'Duzib138G1496' => 'dzi', 'Duzib147G1063' => 'dzi', 'Duzib151G0894' => 'dzi', 'Duzib205G1978' => 'dzi', 'Duzib211G0378' => 'dzi', 'Duzib211G0687' => 'dzi', 'Duzib212G0407' => 'dzi', 'Duzib248G0744' => 'dzi', 'Duzib264G0009' => 'dzi', 'ECA234G1084' => 'eca', 'ECA236G3416' => 'eca', 'ECA240G4256' => 'eca', 'ECA246G0234' => 'eca', 'ECA246G2429' => 'eca', 'ECA247G0537' => 'eca', 'ECA248G0043' => 'eca', 'ECA248G0520' => 'eca', 'ECA248G2463' => 'eca', 'EL10Ac3g06673' => 'bvu', 'EL10Ac5g11144' => 'bvu', 'EL10Ac6g15004' => 'bvu', 'EL10Ac7g17682' => 'bvu', 'EL10Ac7g17916' => 'bvu', 'Eucgr.B00605' => 'egr', 'Eucgr.G02443' => 'egr', 'Eucgr.H02916' => 'egr', 'Eucgr.K01428' => 'egr', 'Eucgr.K02132' => 'egr', 'Eucgr.K02533' => 'egr', 'FAN02G1607' => 'fan', 'FAN04G2043' => 'fan', 'FAN05G0429' => 'fan', 'FAN06G0967' => 'fan', 'FAN07G1729' => 'fan', 'FAN08G1491' => 'fan', 'FAN08G2329' => 'fan', 'FAN09G3898' => 'fan', 'FAN12G0735' => 'fan', 'FAN12G1262' => 'fan', 'FAN13G2713' => 'fan', 'FAN14G3609' => 'fan', 'FAN15G1760' => 'fan', 'FAN15G2597' => 'fan', 'FAN17G0332' => 'fan', 'FAN17G3056' => 'fan', 'FAN18G0780' => 'fan', 'FAN18G2852' => 'fan', 'FAN18G4294' => 'fan', 'FAN22G1807' => 'fan', 'FAN22G2000' => 'fan', 'FAN24G0783' => 'fan', 'FAN24G2105' => 'fan', 'FAN27G1046' => 'fan', 'FAN27G3243' => 'fan', 'FvH4_2g18460' => 'fve', 'FvH4_2g20540' => 'fve', 'FvH4_4g04660' => 'fve', 'FvH4_4g29890' => 'fve', 'FvH4_5g11990' => 'fve', 'FvH4_5g13730' => 'fve', 'FvH4_6g46800' => 'fve', 'Glyma.03G167100' => 'gma', 'Glyma.05G020200' => 'gma', 'Glyma.05G051000' => 'gma', 'Glyma.07G225500' => 'gma', 'Glyma.08G246600' => 'gma', 'Glyma.08G347800' => 'gma', 'Glyma.10G131700' => 'gma', 'Glyma.17G079200' => 'gma', 'Glyma.18G159100' => 'gma', 'Glyma.18G267400' => 'gma', 'Glyma.19G168200' => 'gma', 'Glyma.20G025500' => 'gma', 'Glyma.20G081800' => 'gma', 'Glyma.20G199900' => 'gma', 'Gohir.A02G043200' => 'ghi', 'Gohir.A03G070500' => 'ghi', 'Gohir.A07G152200' => 'ghi', 'Gohir.A08G047500' => 'ghi', 'Gohir.A09G009000' => 'ghi', 'Gohir.A10G107400' => 'ghi', 'Gohir.A11G033400' => 'ghi', 'Gohir.A11G133400' => 'ghi', 'Gohir.A11G139900' => 'ghi', 'Gohir.A12G183100' => 'ghi', 'Gohir.A13G083000' => 'ghi', 'Gohir.D02G048900' => 'ghi', 'Gohir.D03G096900' => 'ghi', 'Gohir.D07G158400' => 'ghi', 'Gohir.D08G057900' => 'ghi', 'Gohir.D09G008200' => 'ghi', 'Gohir.D10G159900' => 'ghi', 'Gohir.D11G036800' => 'ghi', 'Gohir.D11G139500' => 'ghi', 'Gohir.D11G145900' => 'ghi', 'Gohir.D12G186200' => 'ghi', 'Gohir.D13G082900' => 'ghi', 'Gorai.001G181600' => 'gra', 'Gorai.003G101700' => 'gra', 'Gorai.004G059100' => 'gra', 'Gorai.005G054100' => 'gra', 'Gorai.006G009900' => 'gra', 'Gorai.007G039600' => 'gra', 'Gorai.007G149800' => 'gra', 'Gorai.007G156500' => 'gra', 'Gorai.008G199600' => 'gra', 'Gorai.011G179700' => 'gra', 'Gorai.013G094700' => 'gra', 'GSVIVG01003923001' => 'vvi', 'GSVIVG01006504001' => 'vvi', 'GSVIVG01008107001' => 'vvi', 'GSVIVG01012227001' => 'vvi', 'GSVIVG01027918001' => 'vvi', 'GSVIVG01028424001' => 'vvi', 'GSVIVG01032909001' => 'vvi', 'HanXRQChr01g0014991' => 'han', 'HanXRQChr01g0015401' => 'han', 'HanXRQChr01g0023011' => 'han', 'HanXRQChr04g0107971' => 'han', 'HanXRQChr07g0206131' => 'han', 'HanXRQChr08g0230481' => 'han', 'HanXRQChr09g0249281' => 'han', 'HanXRQChr09g0249291' => 'han', 'HanXRQChr09g0251891' => 'han', 'HanXRQChr10g0280581' => 'han', 'HanXRQChr10g0280601' => 'han', 'HanXRQChr10g0280621' => 'han', 'HanXRQChr10g0310641' => 'han', 'HanXRQChr11g0331301' => 'han', 'HanXRQChr12g0377391' => 'han', 'HanXRQChr13g0407911' => 'han', 'HanXRQChr14g0445621' => 'han', 'HanXRQChr14g0461721' => 'han', 'HanXRQChr15g0472471' => 'han', 'HanXRQChr17g0543551' => 'han', 'HanXRQChr17g0550231' => 'han', 'HanXRQChr17g0552741' => 'han', 'Haze_03363' => 'cav', 'Haze_07738' => 'cav', 'Haze_11462' => 'cav', 'Haze_11900' => 'cav', 'Haze_14425' => 'cav', 'Haze_24702' => 'cav', 'Hma1.2p1_0060F.1_g033000' => 'hma', 'Hma1.2p1_0322F.1_g124660' => 'hma', 'Hma1.2p1_0385F.1_g141590' => 'hma', 'Hma1.2p1_0385F.1_g141600' => 'hma', 'Hma1.2p1_0566F.1_g179850' => 'hma', 'Hma1.2p1_1930F.1_g307930' => 'hma', 'HPP92_005115' => 'vpl', 'HPP92_006217' => 'vpl', 'HPP92_008529' => 'vpl', 'HPP92_008530' => 'vpl', 'HPP92_009479' => 'vpl', 'HPP92_024206' => 'vpl', 'HPP92_024245' => 'vpl', 'Hund02577' => 'sun', 'Hund05484' => 'sun', 'Hund09922' => 'sun', 'Hund13143' => 'sun', 'Hund20494' => 'sun', 'Hund24875' => 'sun', 'Lalb_Chr01g0022201' => 'lal', 'Lalb_Chr02g0152731' => 'lal', 'Lalb_Chr03g0036941' => 'lal', 'Lalb_Chr05g0219931' => 'lal', 'Lalb_Chr06g0170711' => 'lal', 'Lalb_Chr09g0328991' => 'lal', 'Lalb_Chr12g0197251' => 'lal', 'Lalb_Chr16g0385501' => 'lal', 'Lalb_Chr19g0125881' => 'lal', 'Lalb_Chr19g0128531' => 'lal', 'Lalb_Chr21g0314131' => 'lal', 'Lj1A73T40' => 'lonja', 'Lj1A89T72' => 'lonja', 'Lj1g0001496' => 'lja', 'Lj1g0016668' => 'lja', 'Lj1g0024360' => 'lja', 'Lj2A1125T49' => 'lonja', 'Lj2C1142G15' => 'lonja', 'Lj3A640G22' => 'lonja', 'Lj4A119G48' => 'lonja', 'Lj4g0001243' => 'lja', 'Lj4g0023208' => 'lja', 'Lj5A102T90' => 'lonja', 'Lj6A621T57' => 'lonja', 'Lj6A778T61' => 'lonja', 'Lj6g0023805' => 'lja', 'Lj9A472G91' => 'lonja', 'Lsat_1_v5_gn_1_75601' => 'lsa', 'Lsat_1_v5_gn_3_97460' => 'lsa', 'Lsat_1_v5_gn_4_11780' => 'lsa', 'Lsat_1_v5_gn_5_177501' => 'lsa', 'Lsat_1_v5_gn_5_181261' => 'lsa', 'Lsat_1_v5_gn_5_22601' => 'lsa', 'Lsat_1_v5_gn_8_89240' => 'lsa', 'Lsat_1_v5_gn_9_11460' => 'lsa', 'Lsat_1_v5_gn_9_97880' => 'lsa', 'Manes.01G027100' => 'mes', 'Manes.01G096400' => 'mes', 'Manes.02G055500' => 'mes', 'Manes.03G158600' => 'mes', 'Manes.05G109900' => 'mes', 'Manes.06G083600' => 'mes', 'Manes.10G059701' => 'mes', 'Manes.12G036600' => 'mes', 'Manes.12G047900' => 'mes', 'Manes.13G040000' => 'mes', 'Manes.13G050000' => 'mes', 'Manes.14G086400' => 'mes', 'Manes.15G046000' => 'mes', 'Mapoly0046s0041' => 'mpo', 'Mapoly0148s0012' => 'mpo', 'MBI01_g42474_MAGBIO' => 'mbi', 'MBI07_g23230_MAGBIO' => 'mbi', 'MBI07_g27650_MAGBIO' => 'mbi', 'MBI07_g46755_MAGBIO' => 'mbi', 'MBI10_g26042_MAGBIO' => 'mbi', 'MBI11_g07412_MAGBIO' => 'mbi', 'MBI16_g10834_MAGBIO' => 'mbi', 'MBI19_g25428_MAGBIO' => 'mbi', 'MCO14G212' => 'mco', 'MD05G1170400' => 'mdo', 'MD05G1189200' => 'mdo', 'MD06G1226000' => 'mdo', 'MD09G1067300' => 'mdo', 'MD10G1158600' => 'mdo', 'MD13G1061800' => 'mdo', 'MD13G1221800' => 'mdo', 'MD14G1212900' => 'mdo', 'MD16G1028000' => 'mdo', 'MD16G1060300' => 'mdo', 'MD16G1226700' => 'mdo', 'MD17G1060400' => 'mdo', 'Medtr1g045800' => 'mtr', 'Medtr1g069520' => 'mtr', 'Medtr1g069545' => 'mtr', 'Medtr3g051170' => 'mtr', 'Medtr4g083150' => 'mtr', 'Medtr4g109640' => 'mtr', 'Medtr7g013840' => 'mtr', 'Medtr7g055610' => 'mtr', 'Medtr7g057520' => 'mtr', 'Medtr7g098440' => 'mtr', 'MELO3C006373.2' => 'cme', 'MELO3C017229.2' => 'cme', 'MELO3C022389.2' => 'cme', 'Migut.D00474' => 'egut', 'Migut.D02451' => 'egut', 'Migut.D02506' => 'egut', 'Migut.G00575' => 'egut', 'Migut.H00619' => 'egut', 'Migut.K01271' => 'egut', 'Migut.L01184' => 'egut', 'Migut.N00302' => 'egut', 'Migut.N00635' => 'egut', 'Migut.N02229' => 'egut', 'MSTRG.12770' => 'ama', 'MSTRG.15448' => 'ama', 'MSTRG.18352' => 'ama', 'MSTRG.18833' => 'ama', 'MSTRG.24659' => 'ama', 'MSTRG.3358' => 'ama', 'MSTRG.7742' => 'ama', 'Nitab4.5_0000212g0280' => 'nta', 'Nitab4.5_0000231g0190' => 'nta', 'Nitab4.5_0000355g0030' => 'nta', 'Nitab4.5_0001161g0050' => 'nta', 'Nitab4.5_0002538g0100' => 'nta', 'Nitab4.5_0002641g0130' => 'nta', 'Nitab4.5_0002641g0140' => 'nta', 'Nitab4.5_0002957g0020' => 'nta', 'Nitab4.5_0002985g0040' => 'nta', 'Nitab4.5_0003020g0160' => 'nta', 'Nitab4.5_0003167g0080' => 'nta', 'Nitab4.5_0003656g0010' => 'nta', 'Nitab4.5_0005910g0020' => 'nta', 'Nitab4.5_0006344g0030' => 'nta', 'Nitab4.5_0007061g0040' => 'nta', 'Nitab4.5_0012090g0020' => 'nta', 'Nitab4.5_0013333g0020' => 'nta', 'Nitab4.5_0014981g0010' => 'nta', 'Nn1g02964' => 'nnu', 'Nn3g17465' => 'nnu', 'Nn3g19113' => 'nnu', 'Nn3g19114' => 'nnu', 'Nn3g19781' => 'nnu', 'Nn3g20052' => 'nnu', 'Nn4g23441' => 'nnu', 'Nn5g29109' => 'nnu', 'Oeu004590.1' => 'oeu', 'Oeu011218.1' => 'oeu', 'Oeu023103.1' => 'oeu', 'Oeu025535.3' => 'oeu', 'Oeu026811.1' => 'oeu', 'Oeu039651.3' => 'oeu', 'Oeu048137.2' => 'oeu', 'Oeu051023.3' => 'oeu', 'Oeu061877.2' => 'oeu', 'Os02g0131700' => 'osa', 'Os02g0497700' => 'osa', 'Os03g0418800' => 'osa', 'Os04g0372800' => 'osa', 'Os04g0510500' => 'osa', 'Os07g0603100' => 'osa', 'Peaxi162Scf00068g02114' => 'pax', 'Peaxi162Scf00175g00034' => 'pax', 'Peaxi162Scf00175g00330' => 'pax', 'Peaxi162Scf00372g01012' => 'pax', 'Peaxi162Scf00517g00032' => 'pax', 'Peaxi162Scf00991g00210' => 'pax', 'Peaxi162Scf00991g00217' => 'pax', 'Peaxi162Scf01044g00228' => 'pax', 'Peaxi162Scf01312g00036' => 'pax', 'PGR004G1681' => 'pgr', 'PGR044G0392' => 'pgr', 'PGR044G0629' => 'pgr', 'PGR044G1090' => 'pgr', 'PGR044G1296' => 'pgr', 'PGR044G2757' => 'pgr', 'PGR119G0360' => 'pgr', 'PGSC0003DMG400001461' => 'stu', 'PGSC0003DMG400001496' => 'stu', 'PGSC0003DMG400020152' => 'stu', 'PGSC0003DMG400020166' => 'stu', 'PGSC0003DMG400020647' => 'stu', 'PGSC0003DMG400022032' => 'stu', 'PGSC0003DMG400027944' => 'stu', 'Phvul.001G164600' => 'pvu', 'Phvul.002G102000' => 'pvu', 'Phvul.003G184000' => 'pvu', 'Phvul.007G232200' => 'pvu', 'Phvul.008G032800' => 'pvu', 'Phvul.008G132300' => 'pvu', 'Phvul.011G133530' => 'pvu', 'Potri.002G246600' => 'ptr', 'Potri.002G257000' => 'ptr', 'Potri.008G096700' => 'ptr', 'Potri.010G065500' => 'ptr', 'Potri.010G157800' => 'ptr', 'Potri.014G192900' => 'ptr', 'Potri.015G058700' => 'ptr', 'Potri.017G094600' => 'ptr', 'Pp3c24_4080' => 'ppa', 'Pp3c26_10400' => 'ppa', 'Pp3c26_10520' => 'ppa', 'Pp3c8_6680' => 'ppa', 'PRCOL_00001830' => 'pco', 'Prupe.1G048900' => 'ppe', 'Prupe.1G288100' => 'ppe', 'Prupe.3G254500' => 'ppe', 'Prupe.5G206200' => 'ppe', 'Prupe.8G197600' => 'ppe', 'Prupe.8G215800' => 'ppe', 'Psat0s2239g0040' => 'psa', 'Psat0s2539g0040' => 'psa', 'Psat0ss3005g0080' => 'psa', 'Psat0ss3005g0160' => 'psa', 'Psat3g053920' => 'psa', 'Psat3g149680' => 'psa', 'Psat4g047640' => 'psa', 'Psat6g062680' => 'psa', 'Psat6g107720' => 'psa', 'Psat7g133680' => 'psa', 'PSO017G1922' => 'pso', 'PSO017G6204' => 'pso', 'PSO063G0173' => 'pso', 'PSO229G0083' => 'pso', 'PSO384G3307' => 'pso', 'PSO478G1371' => 'pso', 'PSO782G4284' => 'pso', 'PSO782G5233' => 'pso', 'QL01p001964' => 'qlo', 'QL02p067523' => 'qlo', 'QL02p067533' => 'qlo', 'QL03p068429' => 'qlo', 'QL03p068462' => 'qlo', 'QL03p074042' => 'qlo', 'QL03p074423' => 'qlo', 'QL05p013969' => 'qlo', 'QL06p009004' => 'qlo', 'QL06p009325' => 'qlo', 'QL06p021047' => 'qlo', 'QL09p041341' => 'qlo', 'QL09p050476' => 'qlo', 'QL10p019819' => 'qlo', 'RcHm_v2.0_Chr2g0165791' => 'rch', 'RcHm_v2.0_Chr3g0487671' => 'rch', 'RcHm_v2.0_Chr4g0395471' => 'rch', 'RcHm_v2.0_Chr4g0438161' => 'rch', 'RcHm_v2.0_Chr6g0275711' => 'rch', 'RcHm_v2.0_Chr6g0275721' => 'rch', 'RcHm_v2.0_Chr6g0283941' => 'rch', 'RcHm_v2.0_Chr6g0286701' => 'rch', 'RcHm_v2.0_Chr7g0183211' => 'rch', 'Rhsim01G0252300' => 'rsi', 'Rhsim02G0044000' => 'rsi', 'Rhsim04G0171800' => 'rsi', 'Rhsim10G0047900' => 'rsi', 'Rhsim10G0048400' => 'rsi', 'Rhsim10G0048600' => 'rsi', 'Rhsim10G0050000' => 'rsi', 'Rhsim12G0074600' => 'rsi', 'Rhsim12G0075100' => 'rsi', 'Rhsim13G0040000' => 'rsi', 'Rhsim13G0049400' => 'rsi', 'Sabra02G0187700' => 'sbr', 'Sabra02G0195400' => 'sbr', 'Sabra08G0072900' => 'sbr', 'Sabra10G0041600' => 'sbr', 'Sabra14G0143200' => 'sbr', 'Sabra15G0084200' => 'sbr', 'Sabra17G0083400' => 'sbr', 'SalBow1G1760' => 'sbo', 'SalBow2G0978' => 'sbo', 'SalBow6G4457' => 'sbo', 'SalBow6G5665' => 'sbo', 'Sc04g0004390' => 'sci', 'Sc04g0007530' => 'sci', 'Sc11g0002510' => 'sci', 'Sc17g0002060' => 'sci', 'Sc19g0005560' => 'sci', 'Sc24g0003660' => 'sci', 'Sed0001974' => 'sed', 'Sed0002637' => 'sed', 'Sed0006272' => 'sed', 'Sed0007005' => 'sed', 'SEGI_00748' => 'sgi', 'SEGI_09153' => 'sgi', 'SEGI_13185' => 'sgi', 'SEGI_14052' => 'sgi', 'SEGI_20429' => 'sgi', 'SEGI_39415' => 'sgi', 'SGA_v2.0_scaffold156G37266' => 'sas', 'SGA_v2.0_scaffold16G07792' => 'sas', 'SGA_v2.0_scaffold207G41863' => 'sas', 'SGA_v2.0_scaffold227G43223' => 'sas', 'SGA_v2.0_scaffold31G12629' => 'sas', 'SGA_v2.0_scaffold36G14465' => 'sas', 'SGA_v2.0_scaffold3G01605' => 'sas', 'SGA_v2.0_scaffold3G01631' => 'sas', 'SGA_v2.0_scaffold4G02381' => 'sas', 'SGA_v2.0_scaffold52G19130' => 'sas', 'SGA_v2.0_scaffold52G19133' => 'sas', 'SGA_v2.0_scaffold67G22681' => 'sas', 'SGA_v2.0_scaffold90G27950' => 'sas', 'SGA_v2.0_scaffold90G27972' => 'sas', 'SHI06581' => 'shi', 'SHI14516' => 'shi', 'SMO356G0593' => 'smo', 'SMO364G0922' => 'smo', 'Solyc02g030490.2' => 'sly', 'Solyc02g030530.1' => 'sly', 'Solyc02g030560.1' => 'sly', 'Solyc02g032790.2' => 'sly', 'Solyc02g066807.1' => 'sly', 'Solyc02g066830.4' => 'sly', 'Solyc02g088920.4' => 'sly', 'Solyc05g012240.3' => 'sly', 'Solyc06g007780.3' => 'sly', 'Solyc06g083300.4' => 'sly', 'Solyc06g083730.3' => 'sly', 'Solyc09g059310.3' => 'sly', 'Solyc09g090940.3' => 'sly', 'Solyc10g083060.1' => 'sly', 'Solyc11g011377.1' => 'sly', 'Sopen00g003130' => 'spe', 'Sopen02g011070' => 'spe', 'Sopen02g011390' => 'spe', 'Sopen02g016060' => 'spe', 'Sopen02g033610' => 'spe', 'Sopen05g007070' => 'spe', 'Sopen06g002660' => 'spe', 'Sopen06g034680' => 'spe', 'Sopen06g035150' => 'spe', 'Sopen09g022440' => 'spe', 'Sopen09g033920' => 'spe', 'Sopen10g006050' => 'spe', 'Sopen10g012580' => 'spe', 'Sopen10g012600' => 'spe', 'Sopen10g021990' => 'spe', 'Sopen10g022000' => 'spe', 'Sp1g12190' => 'spa', 'Sp2g08780' => 'spa', 'Sp2g14480' => 'spa', 'Sp2g19030' => 'spa', 'Sp2g24290' => 'spa', 'Sp3g22220' => 'spa', 'Sp3g22740' => 'spa', 'Sp5g24300' => 'spa', 'TAR362G0663' => 'tar', 'TAR362G1333' => 'tar', 'TAR365G0714' => 'tar', 'TAR371G0311' => 'tar', 'TAR371G0506' => 'tar', 'TAR371G0582' => 'tar', 'TAR374G0243' => 'tar', 'TAR374G1402' => 'tar', 'TAR626G0434' => 'tar', 'TAR629G1969' => 'tar', 'TAR633G1208' => 'tar', 'TAR633G2797' => 'tar', 'TAR636G1725' => 'tar', 'TAR636G3307' => 'tar', 'TAR636G3378' => 'tar', 'THA.LOC104801122' => 'tha', 'THA.LOC104801144' => 'tha', 'THA.LOC104801823' => 'tha', 'THA.LOC104804628' => 'tha', 'THA.LOC104805200' => 'tha', 'THA.LOC104805514' => 'tha', 'THA.LOC104815974' => 'tha', 'THA.LOC104818351' => 'tha', 'THA.LOC104818974' => 'tha', 'THA.LOC104821656' => 'tha', 'THA.LOC104822002' => 'tha', 'THA.LOC104822490' => 'tha', 'THA.LOC104826052' => 'tha', 'Thecc.01G218900' => 'tca', 'Thecc.01G250800' => 'tca', 'Thecc.02G329600' => 'tca', 'Thecc.03G103100' => 'tca', 'Thecc.04G096300' => 'tca', 'Thecc.04G265300' => 'tca', 'Thecc.10G175600' => 'tca', 'Thecc.10G175700' => 'tca', 'Thecc.10G175800' => 'tca', 'Thecc.10G175900' => 'tca', 'Thhalv10002500m.g' => 'esa', 'Thhalv10003207m.g' => 'esa', 'Thhalv10004460m.g' => 'esa', 'Thhalv10005198m.g' => 'esa', 'Thhalv10005515m.g' => 'esa', 'Thhalv10005527m.g' => 'esa', 'Thhalv10007624m.g' => 'esa', 'Thhalv10007774m.g' => 'esa', 'Thhalv10009018m.g' => 'esa', 'Thhalv10009019m.g' => 'esa', 'Thhalv10009384m.g' => 'esa', 'Thhalv10018584m.g' => 'esa', 'TPR.G17023' => 'tpr', 'TPR.G20049' => 'tpr', 'TPR.G2032' => 'tpr', 'TPR.G20912' => 'tpr', 'TPR.G21731' => 'tpr', 'TPR.G24000' => 'tpr', 'TPR.G25595' => 'tpr', 'TPR.G34045' => 'tpr', 'TPR.G6411' => 'tpr', 'TWI09G0211' => 'twi', 'TWI12G1449' => 'twi', 'TWI18G1062' => 'twi', 'TWI18G1452' => 'twi', 'TWI31G0461' => 'twi', 'TWI31G1050' => 'twi', 'TWI32G0419' => 'twi', 'TWI36G0101' => 'twi', 'TWI60G0492' => 'twi', 'TWI73G1123' => 'twi', 'TWI75G1790' => 'twi', 'TWI79G0840' => 'twi', 'unitig_0.g1788' => 'ugi', 'unitig_0.g2247' => 'ugi', 'unitig_26.g9436' => 'ugi', 'unitig_52.g17404' => 'ugi', 'unitig_748.g8427' => 'ugi', 'unitig_749.g13593' => 'ugi', 'unitig_8.g3182' => 'ugi', 'unitig_85.g27267' => 'ugi', 'unitig_899.g15406' => 'ugi', 'vmacro01314' => 'vma', 'vmacro02709' => 'vma', 'vmacro02787' => 'vma', 'vmacro05640' => 'vma', 'vmacro08556' => 'vma', 'vmacro14729' => 'vma', 'vmacro15480' => 'vma', 'vmacro16491' => 'vma', 'VMungo0251G1717' => 'vmu', 'VMungo0720G2053' => 'vmu', 'VMungo0720G2203' => 'vmu', 'VMungo1215G0311' => 'vmu', 'VMungo1383G0560' => 'vmu', 'VMungo1383G2491' => 'vmu', 'Zm00001eb077390' => 'zma', 'Zm00001eb086160' => 'zma', 'Zm00001eb181100' => 'zma', 'Zm00001eb219120' => 'zma', 'Zm00001eb241370' => 'zma', 'Zm00001eb326230' => 'zma', 'Zm00001eb326920' => 'zma', 'Zm00001eb393140' => 'zma', 'Zm00001eb420600' => 'zma' ) $gf_id = 'HOM05D000622' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000622' ) $data_identifier = 'HOM05D000622' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 10, 'aly' => (int) 11, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 29, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 9, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 20, 'dca' => (int) 13, 'din' => (int) 10, 'dzi' => (int) 18, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 14, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 22, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 10, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 10, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 14, 'rch' => (int) 9, 'rsi' => (int) 11, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 14, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 15, 'spe' => (int) 16, 'spa' => (int) 8, 'tar' => (int) 15, 'tha' => (int) 13, 'tca' => (int) 10, 'esa' => (int) 12, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 9, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1